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  "Title": "Standardized Processing and Analysis of Thermal Imaging Data in\nAnimal Studies",
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  "Authors@R": "c(\nperson(\n\"BeiHao\", \"Li\",\nemail = \"szright2000@gmail.com\",\nrole = c(\"aut\", \"cre\")\n)\n)",
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  "URL": "https://github.com/RightSZ/BioThermR,\nhttps://rightsz.github.io/BioThermR/",
  "BugReports": "https://github.com/RightSZ/BioThermR/issues",
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  "Encoding": "UTF-8",
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  "VignetteBuilder": "knitr",
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  "Date/Publication": "2026-05-01 05:46:50 UTC",
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    "assess_replicates",
    "compile_batch_stats",
    "correlate_thermal_traits",
    "create_BioThermR",
    "from_EBImage",
    "load_biothermr",
    "merge_clinical_data",
    "plot_roi_overlap",
    "plot_thermal_3d",
    "plot_thermal_cloud",
    "plot_thermal_density",
    "plot_thermal_heatmap",
    "plot_thermal_montage",
    "read_thermal_batch",
    "read_thermal_flir",
    "read_thermal_raw",
    "roi_filter_interactive",
    "roi_filter_threshold",
    "roi_segment_ebimage",
    "save_biothermr",
    "viz_cor_heatmap",
    "viz_cor_scatter",
    "viz_thermal_barplot",
    "viz_thermal_boxplot",
    "viz_thermal_montage2"
  ],
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    {
      "page": "aggregate_replicates",
      "title": "Aggregate Technical Replicates for Statistical Rigor",
      "topics": [
        "aggregate_replicates"
      ]
    },
    {
      "page": "analyze_thermal_stats",
      "title": "Calculate Comprehensive Thermal Statistics",
      "topics": [
        "analyze_thermal_stats"
      ]
    },
    {
      "page": "as_EBImage",
      "title": "Convert BioThermR Object to EBImage Object",
      "topics": [
        "as_EBImage"
      ]
    },
    {
      "page": "assess_replicates",
      "title": "Assess replicate consistency and repeatability",
      "topics": [
        "assess_replicates"
      ]
    },
    {
      "page": "compile_batch_stats",
      "title": "Compile Batch Statistics into a Tidy Data Frame",
      "topics": [
        "compile_batch_stats"
      ]
    },
    {
      "page": "correlate_thermal_traits",
      "title": "Pairwise Correlation Analysis for Thermal and External Traits",
      "topics": [
        "correlate_thermal_traits"
      ]
    },
    {
      "page": "create_BioThermR",
      "title": "Create BioThermR Object from Data",
      "topics": [
        "create_BioThermR"
      ]
    },
    {
      "page": "from_EBImage",
      "title": "Import EBImage Object into BioThermR",
      "topics": [
        "from_EBImage"
      ]
    },
    {
      "page": "load_biothermr",
      "title": "Load BioThermR Data from Disk",
      "topics": [
        "load_biothermr"
      ]
    },
    {
      "page": "merge_clinical_data",
      "title": "Merge Thermal Stats with Clinical Data",
      "topics": [
        "merge_clinical_data"
      ]
    },
    {
      "page": "plot_roi_overlap",
      "title": "Visualize ROI Overlap and Dice Coefficient",
      "topics": [
        "plot_roi_overlap"
      ]
    },
    {
      "page": "plot_thermal_3d",
      "title": "Interactive 3D Thermal Surface Plot",
      "topics": [
        "plot_thermal_3d"
      ]
    },
    {
      "page": "plot_thermal_cloud",
      "title": "Generate a \"Thermal Cloud\" Visualization (Phyllotaxis Layout)",
      "topics": [
        "plot_thermal_cloud"
      ]
    },
    {
      "page": "plot_thermal_density",
      "title": "Visualize Temperature Distribution (Density Plot)",
      "topics": [
        "plot_thermal_density"
      ]
    },
    {
      "page": "plot_thermal_heatmap",
      "title": "Visualize Thermal Matrix as 2D Heatmap",
      "topics": [
        "plot_thermal_heatmap"
      ]
    },
    {
      "page": "plot_thermal_montage",
      "title": "Create a Gap-Free Thermal Image Montage",
      "topics": [
        "plot_thermal_montage"
      ]
    },
    {
      "page": "read_thermal_batch",
      "title": "Batch Read .raw Files",
      "topics": [
        "read_thermal_batch"
      ]
    },
    {
      "page": "read_thermal_flir",
      "title": "Read FLIR Radiometric JPG File",
      "topics": [
        "read_thermal_flir"
      ]
    },
    {
      "page": "read_thermal_raw",
      "title": "Read a Single .raw Thermal Image File",
      "topics": [
        "read_thermal_raw"
      ]
    },
    {
      "page": "roi_filter_interactive",
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      "topics": [
        "roi_filter_interactive"
      ]
    },
    {
      "page": "roi_filter_threshold",
      "title": "Filter Thermal Image by Temperature Thresholds",
      "topics": [
        "roi_filter_threshold"
      ]
    },
    {
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      "title": "Automated ROI Segmentation via EBImage",
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        "roi_segment_ebimage"
      ]
    },
    {
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      "title": "Save BioThermR Data Objects to Disk",
      "topics": [
        "save_biothermr"
      ]
    },
    {
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      "title": "Visualize Thermal Correlation Heatmap",
      "topics": [
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      ]
    },
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      "topics": [
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      ]
    },
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      "page": "viz_thermal_barplot",
      "title": "Generate Publication-Ready Comparative Barplots",
      "topics": [
        "viz_thermal_barplot"
      ]
    },
    {
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      "topics": [
        "viz_thermal_boxplot"
      ]
    },
    {
      "page": "viz_thermal_montage2",
      "title": "Create a Thermal Image Montage",
      "topics": [
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      ]
    }
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