{ "_id": "6a141cc8acfb0bcc41d3db17", "Package": "xvm", "Title": "Read, Parse and Visualize 'XVG'/'XPM' Files from Molecular\nDynamics", "Version": "0.0.2", "Authors@R": "person(given = \"BeiHao\",family = \"Li\",email = \"szright2000@gmail.com\",role = c(\"aut\",\"cre\"))", "Description": "Provides tools for reading, parsing and visualizing\nsimulation data stored in 'xvg'/'xpm' file formats (commonly\ngenerated by 'GROMACS' molecular dynamics software).\nStreamlines post-processing and analysis of molecular dynamics\n('MD') simulation outputs, enabling efficient exploration of\nmolecular stability and conformational changes. Supports import\nof trajectory metrics ('RMSD', energy, temperature) and\ncreation of publication-ready visualizations through\nintegration with 'ggplot2'.", "URL": "https://github.com/RightSZ/xvm, https://rightsz.github.io/xvm/", "BugReports": "https://github.com/RightSZ/xvm/issues", "Encoding": "UTF-8", "Roxygen": "list(markdown = TRUE)", "RoxygenNote": "7.3.2", "VignetteBuilder": "knitr", "License": "GPL (>= 3)", "Config/pak/sysreqs": "cmake make libicu-dev libuv1-dev libssl-dev", "Repository": "https://rightsz.r-universe.dev", "Date/Publication": "2025-04-30 07:51:26 UTC", "RemoteUrl": "https://github.com/rightsz/xvm", "RemoteRef": "HEAD", "RemoteSha": "6ad84b134f4cabf0ec763d0e3d72cb90844dedb6", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-25 09:52:50 UTC", "User": "root" }, "Author": "BeiHao Li [aut, cre]", "Maintainer": "BeiHao Li ", "MD5sum": "cb2a9b5fc22e3f5ff654e9bce45fa002", "_user": "rightsz", "_type": "src", "_file": "xvm_0.0.2.tar.gz", "_fileid": "b6ce025f4398f71bfa51742fa2c634bda16d51bc7c6c0319d6498b377b4b1c3e", "_filesize": 686174, "_sha256": "b6ce025f4398f71bfa51742fa2c634bda16d51bc7c6c0319d6498b377b4b1c3e", "_created": "2026-05-25T09:52:50.000Z", "_published": "2026-05-25T09:56:24.883Z", "_distro": "noble", "_jobs": [ { "job": 77691797012, "time": 159, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "7195916360" }, { "job": 77691797017, "time": 156, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7195915566" }, { "job": 77691796997, "time": 175, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "7195912581" }, { "job": 77691796989, "time": 172, "config": "macos-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7195910117" }, { "job": 77691312373, "time": 223, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7195875266" }, { "job": 77691796988, "time": 129, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7195908330" }, { "job": 77691797006, "time": 109, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "7195903329" }, { "job": 77691797019, "time": 91, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "7195899142" }, { "job": 77691797029, "time": 93, "config": "windows-release", "r": "4.6.0", "check": "OK", "artifact": "7195899418" } ], "_buildurl": "https://github.com/r-universe/rightsz/actions/runs/26394323921", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/rightsz/xvm", "_commit": { "id": "6ad84b134f4cabf0ec763d0e3d72cb90844dedb6", "author": "RightSZ ", "committer": "RightSZ ", "message": "update news.md\n", "time": 1745999486 }, "_maintainer": { "name": "BeiHao Li", "email": "szright2000@gmail.com" }, "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 4.1.0", "role": "Depends" }, { "package": "ggplot2", "role": "Imports" }, { "package": "tidyr", "role": "Imports" }, { "package": "ggnewscale", "role": "Imports" }, { "package": "plotly", "role": "Imports" }, { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "ggpubr", "role": "Suggests" }, { "package": "stringr", "role": "Suggests" } ], "_owner": "rightsz", "_selfowned": true, "_usedby": 0, "_updates": [], "_tags": [], "_stars": 0, "_userbio": { "uuid": 53969507, "type": "user", "name": "Right_SZ" }, "_downloads": { "count": 222, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/xvm" }, "_devurl": "https://github.com/rightsz/xvm", "_pkgdown": "https://rightsz.github.io/xvm/", "_searchresults": 28, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md", "extra/xvm.html", "manual.pdf" ], "_homeurl": "https://github.com/rightsz/xvm", "_realowner": "rightsz", "_cranurl": true, "_releases": [ { "version": "0.0.1", "date": "2025-04-23" }, { "version": "0.0.2", "date": "2025-04-30" } ], "_exports": [ "export_xvg", "plot_xpm", "plot_xpm_3d", "plot_xpm_facet", "plot_xvg", "read_xpm", "read_xvg", "summary_xvg" ], "_help": [ { "page": "export_xvg", "title": "export xvg data object", "topics": [ "export_xvg" ] }, { "page": "plot_xpm", "title": "plot xpm data", "topics": [ "plot_xpm" ] }, { "page": "plot_xpm_3d", "title": "generate 3d scatter plot from xpm data", "topics": [ "plot_xpm_3d" ] }, { "page": "plot_xpm_facet", "title": "generate faceted plots from xpm data", "topics": [ "plot_xpm_facet" ] }, { "page": "plot_xvg", "title": "plot xvg data", "topics": [ "plot_xvg" ] }, { "page": "read_xpm", "title": "read xpm files", "topics": [ "read_xpm" ] }, { "page": "read_xvg", "title": "read xvg files", "topics": [ "read_xvg" ] }, { "page": "summary_xvg", "title": "summarize xvg data", "topics": [ "summary_xvg" ] } ], "_readme": "https://github.com/rightsz/xvm/raw/HEAD/README.md", "_rundeps": [ "askpass", "base64enc", "bslib", "cachem", "cli", "cpp11", "crosstalk", "curl", "data.table", "digest", "dplyr", "evaluate", "farver", "fastmap", "fontawesome", "fs", "generics", "ggnewscale", "ggplot2", "glue", "gtable", "highr", "htmltools", "htmlwidgets", "httr", "isoband", "jquerylib", "jsonlite", "knitr", "labeling", "later", "lazyeval", "lifecycle", "magrittr", "memoise", "mime", "openssl", "otel", "pillar", "pkgconfig", "plotly", "promises", "purrr", "R6", "rappdirs", "RColorBrewer", "Rcpp", "rlang", "rmarkdown", "S7", "sass", "scales", "stringi", "stringr", "sys", "tibble", "tidyr", "tidyselect", "tinytex", "utf8", "vctrs", "viridisLite", "withr", "xfun", "yaml" ], "_vignettes": [ { "source": "xpm_file.Rmd", "filename": "xpm_file.html", "title": "read and plot xpm file", "engine": "knitr::rmarkdown", "headings": [ "Load the xvm package and dependency packages", "Read a single xpm file and plot it.", "Get Example File Path", "Read the xpm file", "Plot the xpm data", "Read multiple xpm Files", "Batch read xpm files", "Inspect a single xpm file", "Plot multiple xpm files", "Arrange plots using ggpubr", "Plot pseudo-3D from xpm file", "Plot 3D scatter plot from xpm file" ], "created": "2025-04-18 06:23:40", "modified": "2025-04-18 06:23:40", "commits": 1 }, { "source": "xvg_file.Rmd", "filename": "xvg_file.html", "title": "read and plot xvg file", "engine": "knitr::rmarkdown", "headings": [ "Load the xvm package and dependency packages", "Read a single xvg file and plot it.", "Get Example File Path", "Read the xvg file", "Plot the xvg data", "Read multiple xvg Files", "Batch read xvg files", "Inspect a single xvg file", "Plot a single xvg file", "Plot multiple xvg files", "Arrange plots using ggpubr" ], "created": "2025-04-18 06:23:40", "modified": "2025-04-18 06:23:40", "commits": 1 } ], "_score": 4.447158031342219, "_indexed": true, "_nocasepkg": "xvm", "_universes": [ "rightsz" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "0.0.2", "date": "2026-05-25T09:55:21.000Z", "distro": "noble", "commit": "6ad84b134f4cabf0ec763d0e3d72cb90844dedb6", "fileid": "bf54f278671cf6527f1f1adafdcf4f3340178dccac4d808e1e446d3283cc8f60", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/rightsz/actions/runs/26394323921" }, { "r": "4.6.0", "os": "linux", "version": "0.0.2", "date": "2026-05-25T09:55:21.000Z", "distro": "noble", "commit": "6ad84b134f4cabf0ec763d0e3d72cb90844dedb6", "fileid": "1c8dbcd8c4725cb34cdfa5df9b51d543a13e37ed0a657df5e32e8f3494c768ee", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/rightsz/actions/runs/26394323921" }, { "r": "4.5.3", "os": "mac", "version": "0.0.2", "date": "2026-05-25T09:55:13.000Z", "commit": "6ad84b134f4cabf0ec763d0e3d72cb90844dedb6", "fileid": "88485340aae5e93d23f0d164ccedc6a5e83ba6e817a116a54013ac75b96a8e57", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/rightsz/actions/runs/26394323921" }, { "r": "4.6.0", "os": "mac", "version": "0.0.2", "date": "2026-05-25T09:55:06.000Z", "commit": "6ad84b134f4cabf0ec763d0e3d72cb90844dedb6", "fileid": "9813e1038ad60fb9092308e48011502ce4021fee88a7f39ea74ef46aa9e77010", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/rightsz/actions/runs/26394323921" }, { "r": "4.6.0", "os": "wasm", "version": "0.0.2", "date": "2026-05-25T09:55:20.000Z", "commit": "6ad84b134f4cabf0ec763d0e3d72cb90844dedb6", "fileid": "7c46ea1b53c697b0737d5b4bee45f87d73f6292e2ba183efb499bf29f09b1ba9", "status": "success", "buildurl": "https://github.com/r-universe/rightsz/actions/runs/26394323921" }, { "r": "4.7.0", "os": "win", "version": "0.0.2", "date": "2026-05-25T09:54:24.000Z", "commit": "6ad84b134f4cabf0ec763d0e3d72cb90844dedb6", "fileid": "b6da3779167e2bbc64b6ed20d3cf63f9518f6de3ab97e1bfe54306f4043f6957", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/rightsz/actions/runs/26394323921" }, { "r": "4.5.3", "os": "win", "version": "0.0.2", "date": "2026-05-25T09:54:10.000Z", "commit": "6ad84b134f4cabf0ec763d0e3d72cb90844dedb6", "fileid": "dc972f6c0373d19428971f8c464694d451bed1e65df05f77b71985cbd3df0c86", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/rightsz/actions/runs/26394323921" }, { "r": "4.6.0", "os": "win", "version": "0.0.2", "date": "2026-05-25T09:54:11.000Z", "commit": "6ad84b134f4cabf0ec763d0e3d72cb90844dedb6", "fileid": "224710ac248423d4aa6674670146f3b59914c8655a314d26534f216b002195ff", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/rightsz/actions/runs/26394323921" } ] }