Package: xvm 0.0.2

BeiHao Li

xvm: Read, Parse and Visualize 'XVG'/'XPM' Files from Molecular Dynamics

Provides tools for reading, parsing and visualizing simulation data stored in 'xvg'/'xpm' file formats (commonly generated by 'GROMACS' molecular dynamics software). Streamlines post-processing and analysis of molecular dynamics ('MD') simulation outputs, enabling efficient exploration of molecular stability and conformational changes. Supports import of trajectory metrics ('RMSD', energy, temperature) and creation of publication-ready visualizations through integration with 'ggplot2'.

Authors:BeiHao Li [aut, cre]

xvm_0.0.2.tar.gz
xvm_0.0.2.zip(r-4.7-any)xvm_0.0.2.zip(r-4.6-any)xvm_0.0.2.zip(r-4.5-any)
xvm_0.0.2.tgz(r-4.6-any)xvm_0.0.2.tgz(r-4.5-any)
xvm_0.0.2.tar.gz(r-4.7-any)xvm_0.0.2.tar.gz(r-4.6-any)
xvm_0.0.2.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
xvm/json (API)

# Install 'xvm' in R:
install.packages('xvm', repos = c('https://rightsz.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/rightsz/xvm/issues

Pkgdown/docs site:https://rightsz.github.io

On CRAN:

Conda:

4.66 score 46 scripts 216 downloads 8 exports 65 dependencies

Last updated from:a8ddbc9ce1. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-develOK140
source / vignettesOK191
linux-releaseOK144
macos-releaseOK168
macos-oldrelOK180
windows-develOK88
windows-releaseOK104
windows-oldrelOK96
wasm-releaseOK125

Exports:export_xvgplot_xpmplot_xpm_3dplot_xpm_facetplot_xvgread_xpmread_xvgsummary_xvg

Dependencies:askpassbase64encbslibcachemclicpp11crosstalkcurldata.tabledigestdplyrevaluatefarverfastmapfontawesomefsgenericsggnewscaleggplot2gluegtablehighrhtmltoolshtmlwidgetshttrisobandjquerylibjsonliteknitrlabelinglaterlazyevallifecyclemagrittrmemoisemimeopensslotelpillarpkgconfigplotlypromisespurrrR6rappdirsRColorBrewerRcpprlangrmarkdownS7sassscalesstringistringrsystibbletidyrtidyselecttinytexutf8vctrsviridisLitewithrxfunyaml

read and plot xpm file
Load the xvm package and dependency packages | Read a single xpm file and plot it. | Get Example File Path | Read the xpm file | Plot the xpm data | Read multiple xpm Files | Batch read xpm files | Inspect a single xpm file | Plot multiple xpm files | Arrange plots using ggpubr | Plot pseudo-3D from xpm file | Plot 3D scatter plot from xpm file
Rendered fromxpm_file.Rmdusingknitr::rmarkdown

Last update: 2025-04-18
Started: 2025-04-18

read and plot xvg file
Load the xvm package and dependency packages | Read a single xvg file and plot it. | Get Example File Path | Read the xvg file | Plot the xvg data | Read multiple xvg Files | Batch read xvg files | Inspect a single xvg file | Plot a single xvg file | Plot multiple xvg files | Arrange plots using ggpubr
Rendered fromxvg_file.Rmdusingknitr::rmarkdown

Last update: 2025-04-18
Started: 2025-04-18